PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04370
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 343aa    MW: 37685.4 Da    PI: 8.7276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04370genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.8e-1372116147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Ro07_G04370  72 RESWTDQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 116
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MVSVNPNPAQ GFYLFDPKNM GLPGLNSMPP PAASTAATTS TTTVCTAPNN AVSLAEDQSK  60
KIRKPYTITK SRESWTDQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFLKV  120
QKKGTSEHVP PPRPKRKATH PYPQKAPKSA PVVSQVVGPF ESSSALLEHG YAYQPDSSFV  180
LGTPVTSATL SSWSHSYVPP VNASQITKDN GRLAGSTDAQ NSCYSSSNES NPPPFPMGET  240
VGRTGHSQPP RVLPDFAQVY KFIGSVFDPD STSHLERLKQ MDPINLETAL LLMRNLSINL  300
TSPEFEDHRR ILLLYDADSE KAKPDSSCNF PSHVKSENAI LSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-103MYB_related family protein