PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04609
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 395aa    MW: 42954.6 Da    PI: 9.9365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04609genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-14133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
      Ro07_G04609 133 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 177
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MVKESARKCS HCGHNGHNSR TCNNVAHEVN NNNKGVCLKL FGVNIMEKQD DSMKKSFSMG  60
NLQAAGNGDH NNNINVGADD AGYLSDGLIH NKKRKAAHER KKEYIPISLL IMHDSSNWKL  120
QYYAFGLDCS GRPWTEEEHR VFLAGLKKLG KGDWRGIARN FVTTRTPTQV ASHAQKYFLR  180
QATNDKRKRR TSLFDMHFKE LSEQCAHQDF PLSPTAKTAE ASSSSSQASS SKVQPQIITT  240
KNSPQASMPA QVLNRFPHLC LDSPPAVAPI SAASCSVPNY APVIPYMVGM PGTVPYTPTM  300
HYGSPSFHYM LKTQGGSFAT CAPVISHPSG IPSSPRSLPS SPSMAGVHRM NSSITKKDAS  360
ELKIGQPQPS QGANLSSSSS GAIRSPIVEF SPNVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-50MYB_related family protein