PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04780
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 246aa    MW: 27520.2 Da    PI: 8.5794
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04780genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.49.2e-141696185
     trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                 +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++  r+ g  ++  qCk++++ l+k+yk +k           st+ ++d l
  Ro07_G04780 16 CWSDDATSLLITAWGDRYLQLNRGNLRQKDWKEVADAVnsRQNGGVKTDGQCKNRIDTLKKKYKLEKSKPFP------STWIFYDTL 96
                 7*************************************99889999******************98865543......466666666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MDRPTRPYAP GGREDCWSDD ATSLLITAWG DRYLQLNRGN LRQKDWKEVA DAVNSRQNGG  60
VKTDGQCKNR IDTLKKKYKL EKSKPFPSTW IFYDTLDSLI GISPNAAVSS KSTKPLTLAL  120
TLKSGDPSPR PLGSTESDGD GDGDVEGGVG LSGGAACREL ARAILKFGEI YERMESCKQE  180
QMIELEKQRM AFTKELEVQR LNMFMDAQLE LEKIKRPKYS HSSVPALKGN SLVKFGAMRY  240
LQQEEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.22e-59Trihelix family protein