PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04787

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 270aa MW: 30097.9 Da PI: 6.3179

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04787	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.2	9e-19	27	72	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I++ ++ gR++k+c++rw + Ro07_G04787 27 KGSWSPQEDATLIKLVAQHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 72 799***************************.*********985 PP
2	Myb_DNA-binding	51.2	2.9e-16	80	123	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++T+ Ed +v a++++G++ W+tIar ++ gRt++ +k++w++ Ro07_G04787 80 KPFTPAEDAAIVWAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 123 68*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MKQKLRNAAV LRFMHANNPI FIHKRVKGSW SPQEDATLIK LVAQHGPRNW SLISSGIPGR 60 SGKSCRLRWC NQLSPDVQHK PFTPAEDAAI VWAHALHGNK WATIARLLPG RTDNAIKNHW 120 NSTLRRRRLA ESSSDSNSAA LKRSLVGAAA SDESEMKRQC MLGSSREEDS FKVVAAGVEG 180 VLTSLTLSPP GEKVENEVVL KGEEEEEEVE ENDNHEEEAV DDTVEMEETC LMTMMQRMIA 240 QEVRNYIESL RAENGLAFGL QSAVQDNPKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-55	MYB family protein