PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G04788
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 267aa    MW: 29400.3 Da    PI: 8.894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G04788genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-1275121354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+++E+rRRdriN  +++Lr+l+P +      K++Ka+ L  +++ +k+L
  Ro07_G04788  75 KSHSQAEKRRRDRINAQLATLRKLIPMS-----DKMDKAALLGSVIDEVKDL 121
                  79*************************8.....7***********9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MENCNHAQGP SWVHHQYQTT AAAVSNESSS FQVPWPHDSS NSNTPFQFCG GFQPSWSSTA  60
DQGLAEQDRA ASASKSHSQA EKRRRDRINA QLATLRKLIP MSDKMDKAAL LGSVIDEVKD  120
LKRKAIEVSK AFMVPTEVDD ITVSQCDVNA HEGTDINSTS INKSKDNNIM IRASVCCDDR  180
AELFTELIQV LKGLKLTAVK ADIASTGGRI KSVLVLCSKD SEEAVSISTL KQALKLVLSK  240
IAASSVTPNC RFRSKRQRFF LPFHYPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-50bHLH family protein