PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G06812
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 103aa    MW: 12645.6 Da    PI: 9.2446
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G06812genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34.2e-093372445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++++E++l+++  ++ G + W++Ia +++ gRt++++  +w 
      Ro07_G06812 33 MSEQEEDLIYRMYRLVGER-WDLIAGRIP-GRTAEELERFWI 72
                     589****************.*********.*********995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    
MQNMDRCRRK KPKITTSDQS EEIISIEWEF IHMSEQEEDL IYRMYRLVGE RWDLIAGRIP  60
GRTAEELERF WIMRHCDMFA EKRNKHKKDN PKTVPRQIFN GFK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.12e-27MYB_related family protein