PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G06913

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25548.2 Da PI: 5.1256

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G06913	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	26	77	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le+ Fe ++++ +++ + A++lgL+ rqV +WFqNrRa++k Ro07_G06913 26 RRFSDEQIKLLESIFELDSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 77 58*************************************************9 PP
2	HD-ZIP_I/II	119.9	1.4e-38	24	115	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 + rr+s+eq+klLE+ Fe ++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L+++yd l+++ e+L++e+++L +l++ Ro07_G06913 24 NSRRFSDEQIKLLESIFELDSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRNEYDLLASKFESLKEEKQSLLIQLEK 115 569***********************************************************************************998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MERETESLDT HSTAKRKKAN KGKNSRRFSD EQIKLLESIF ELDSKLEPRR KVQVARELGL 60 QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRN EYDLLASKFE SLKEEKQSLL IQLEKLNDLV 120 GKTKDDDANT DGRDLESSSD KDGNCETREE RQSNLESHKN ITSNDVGDEE EHDQQLMNMC 180 QVEAIVSPED WHRFDSSGLF DPSRSSIATS QWLNFWIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	80	RRARWKSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-45	HD-ZIP family protein