PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G07748
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 229aa    MW: 25196.2 Da    PI: 4.9561
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G07748genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.11.3e-377103196
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  +C aCk+lrrkC+++Cv+ap+f+ +q + +fa+vhk+FGasnv+kll +lpe++r+da+ ++ yeA ar+rdPvyG+v+ i++lqqq++ l++e+++
  Ro07_G07748   7 SCGACKFLRRKCTSGCVFAPHFCYDQaATHFAAVHKVFGASNVSKLLLSLPEQNRSDAALTMSYEALARMRDPVYGCVSQIFALQQQVAYLQEEIET 103
                  6************************9789****************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTS GCVFAPHFCY DQAATHFAAV HKVFGASNVS KLLLSLPEQN  60
RSDAALTMSY EALARMRDPV YGCVSQIFAL QQQVAYLQEE IETLLGNQMV NLASGNSSTC  120
GSSEANSNSN SFSGLQVFPQ HHDISVWTQY LQSQPELPVL LPQAGMASTN QGNSSHEIDI  180
QMPPLHAWEE ANLFGNRSTQ YPLERFLEGI DQENLGYNPW LNDPSIAWN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-55LBD family protein