PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07859

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 413aa MW: 46183.9 Da PI: 6.3553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07859	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.5e-13	199	250	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ Ro07_G07859 199 QRMTHITVERNRRRQMNDHLNVLRSLMPNS---YIQRGDQASIVGGAIDFVKELE 250 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MERLQGPINP CFFGDLLDLH CLEQGFSTTT ATDGLRFEEE EARYLSGLAD RMPFLQMLQS 60 IDFPPSDFTQ KEPSFQALLR LQNLKTTPPW PEMENIQIQT LEALESCVTH DNQQQLYSPA 120 KSEGKDLHQN PLSVSGTVEG GGVSSDCNQE LQQQQQPKSS EMGPNQTQFT KSASSPATRE 180 RRKRKRTRPT KNKEEVESQR MTHITVERNR RRQMNDHLNV LRSLMPNSYI QRGDQASIVG 240 GAIDFVKELE QHLQSLEAKK RMRRAEGFTC NVDHNNNNPL SSSSPSSSAM VMPSNGMFMS 300 LSQCKIGSLE EGNTCGDDGV TAQNKSEAAD IDVTVIQTHV NLKVKCQKKP GQLVRALVAL 360 EDLRLTVLHL NITSSEDKVL YSFNLKIEEG CKLGSADDIA RAVHQIFNFI NGS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MERLQGPINP CFFGDLLDLH CLEQGFSTTT ATDGLRFEEE EARYLSGLAD RMPFLQMLQS  60
IDFPPSDFTQ KEPSFQALLR LQNLKTTPPW PEMENIQIQT LEALESCVTH DNQQQLYSPA  120
KSEGKDLHQN PLSVSGTVEG GGVSSDCNQE LQQQQQPKSS EMGPNQTQFT KSASSPATRE  180
RRKRKRTRPT KNKEEVESQR MTHITVERNR RRQMNDHLNV LRSLMPNSYI QRGDQASIVG  240
GAIDFVKELE QHLQSLEAKK RMRRAEGFTC NVDHNNNNPL SSSSPSSSAM VMPSNGMFMS  300
LSQCKIGSLE EGNTCGDDGV TAQNKSEAAD IDVTVIQTHV NLKVKCQKKP GQLVRALVAL  360
EDLRLTVLHL NITSSEDKVL YSFNLKIEEG CKLGSADDIA RAVHQIFNFI NGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	186	RRKRKR
2	200	211	RMTHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	2e-67	bHLH family protein