PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G07937
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 213aa    MW: 23546 Da    PI: 6.2432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G07937genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-184494155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Ro07_G07937 44 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAYCLKG 94
                 68*****887.**********843...6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MEKPPYTEDD LSTPTTTTTT AATSTTIQNH ENQPDSQRSG TRHPVYRGVR KRRWGKWVSE  60
IREPRKKSRI WLGSFPVPEM AAKAYDVAAY CLKGRKAQLN FPDEVEHLPR PSTCTARDIQ  120
AAAAKAAQTM KSSSSTENSN RSNDLHLQDH HDVSDGGDDF WGEIELPELM NSGTCYSNSC  180
GWSTVSGDAA ALTWSEAEAF MLPSSVRPVV LAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-56ERF family protein