PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07939

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 589aa MW: 64690.8 Da PI: 6.7923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07939	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.5	1.2e-13	394	440	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A++YI++Lq Ro07_G07939 394 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIDYINELQ 440 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MACLQMKIEM GLGGGIWKDE DQAMVAAVLG TQAFDYLISS SVSSNENSCM GIGTDESLHN 60 KLSDLVESPN ASNFSWNYAI FWQISRSNSG DWVLCWGDGS CREPKEDEYN GALGLDRVTD 120 TEMFLLASMY FSFPRGEGGP GKCLASGKHV WHSDLLKSGS DYCVRSFLAK SAGIQTIVLV 180 PTDVGVVELG SASLTRAKPM AAALPIMSKK RDEIVAHQPN LGIVERGGER VPKIFGQDLN 240 SGNPGRPRYR EKLAVRKVEE RPWDAYSNGN RIAFSSAQNG IHGSSWGQSH VVKQGNPPGV 300 YASQGPVNNL QELANGARDD FRLSHYQPQK QAPMQIDFSG ATSRASVVAR PVVVESENSD 360 AEAPCKEELP STADERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI 420 SKMDKASLLG DAIDYINELQ AKLKVMESER EFLGGTSRDT SPLVANPSTE NQIRGSHVDI 480 QAVHDEVLVK VSCPLDSHPA SRVIQTFKEA QMNVVESKFD AANDTVFHTF VVKSQGSEQL 540 TKEKLIAAFS RESNSLQSLS SAIPFDMSPF YKGVEVSPIL PEKNLSRKS

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MACLQMKIEM GLGGGIWKDE DQAMVAAVLG TQAFDYLISS SVSSNENSCM GIGTDESLHN  60
KLSDLVESPN ASNFSWNYAI FWQISRSNSG DWVLCWGDGS CREPKEDEYN GALGLDRVTD  120
TEMFLLASMY FSFPRGEGGP GKCLASGKHV WHSDLLKSGS DYCVRSFLAK SAGIQTIVLV  180
PTDVGVVELG SASLTRAKPM AAALPIMSKK RDEIVAHQPN LGIVERGGER VPKIFGQDLN  240
SGNPGRPRYR EKLAVRKVEE RPWDAYSNGN RIAFSSAQNG IHGSSWGQSH VVKQGNPPGV  300
YASQGPVNNL QELANGARDD FRLSHYQPQK QAPMQIDFSG ATSRASVVAR PVVVESENSD  360
AEAPCKEELP STADERRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI  420
SKMDKASLLG DAIDYINELQ AKLKVMESER EFLGGTSRDT SPLVANPSTE NQIRGSHVDI  480
QAVHDEVLVK VSCPLDSHPA SRVIQTFKEA QMNVVESKFD AANDTVFHTF VVKSQGSEQL  540
TKEKLIAAFS RESNSLQSLS SAIPFDMSPF YKGVEVSPIL PEKNLSRKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	384	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-172	bHLH family protein