PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G08949

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 324aa MW: 36192.4 Da PI: 7.268

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G08949	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.5e-18	14	68	1	48
TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++ +++Ggg +W+ +++ g++R++k+c++rw +yl Ro07_G08949 14 KGPWTEEEDEKLVKYMERYGGGgggrggiSWRQVPKLAGLKRCGKSCRLRWTNYL 68 79***************************************************97 PP
2	Myb_DNA-binding	45.2	2.2e-14	74	119	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++ +++++++ G++ W++Ia+ ++ gRt++++k++w+++l Ro07_G08949 74 RGNLSHQEEQTIINLHALVGNK-WSAIASNLP-GRTDNEIKNFWNTHL 119 788999**************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MGRSACCDEN GLKKGPWTEE EDEKLVKYME RYGGGGGGRG GISWRQVPKL AGLKRCGKSC 60 RLRWTNYLRP DIKRGNLSHQ EEQTIINLHA LVGNKWSAIA SNLPGRTDNE IKNFWNTHLK 120 KKLLQMGIDP VTHTPITTPH NHHISTTATS TLPPQLLAAT YNNLMSNNTT PWDWAHLQYL 180 NSVHATQIVA EILRGQGLVI SNSTTPTSTT TNSYDHYPYI LGMEMEAAVT NYYSYLLGSS 240 PSSSTSVPDH QLVYHHGHGL GYDYADLTMI NRHSNCPQAT SLGNTTTTTT TSMDDDNQEA 300 TNDQSYWKRH IMDIDIASSQ IWSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-70	MYB family protein