PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G08990
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 554aa    MW: 62998.3 Da    PI: 8.9302
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G08990genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-1529119198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv +ps  + ++ l +p k a e g++   s   tl  ++g +W+v l  ++  +++++ +GW++F++ + L  g f+vF+++g+s+f  +v++f+
  Ro07_G08990  29 FFKVILPSTINDQK-LDIPLKSAIELGED--LSDVATLGVPTGDEWQVGL--QRAHNKIWFVDGWQQFAEHHSLTHGQFLVFSYQGNSTF--HVRIFD 119
                  88999888887776.********999866..888999999**********..9*********************************9999..999997 PP
2B354.62e-17231326199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff v ++s +l++  +++p  fa e+++   +s  +++ed++g++W++++  + +  ++ ++kG  eF ++  LkegD+++F+l++r++  l+v+v+r
  Ro07_G08990 231 FFAVILQSRNLEKYYMYVPSAFAMEYMIG--CSEIIKFEDSDGKQWDIRCV-SARNTSFRIGKGCCEFFRDISLKEGDVCLFELIKRKDVVLKVSVLR 325
                  7888999*******************866..8899***************5.44445799***************************99999999998 PP

                  S CS
           B3  99 k 99 
                  +
  Ro07_G08990 326 A 326
                  6 PP
3B3512.6e-164495301799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +p kf+e+h +   ++  + l+ +  ++W+v+++y +  s++  +++GW+ F k+n+Lk+gD++vF+l+++++  l+ ++fr+
  Ro07_G08990 449 HVPAKFVENHLLG--CTEFINLKASGLKKWRVRCSYrEPPSQTKKISTGWNAFSKDNDLKVGDVCVFELIKSEGVVLKASIFRE 530
                  689****999655..455699999999*********555555599*************************99999899998886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    
MAVPTSKAHR RRMEPAVNSR RLSDSLANFF KVILPSTIND QKLDIPLKSA IELGEDLSDV  60
ATLGVPTGDE WQVGLQRAHN KIWFVDGWQQ FAEHHSLTHG QFLVFSYQGN STFHVRIFDF  120
TSCEIDYPCV AQSIKHEEDV EDDVCGTLPS RHACVKGKGK CVDQHVKGKR KSVANAKKLK  180
RAKLNENRKE CKEIFVLNTS AYTYPNSKLK IPEESQKVIH ATGMFKLENP FFAVILQSRN  240
LEKYYMYVPS AFAMEYMIGC SEIIKFEDSD GKQWDIRCVS ARNTSFRIGK GCCEFFRDIS  300
LKEGDVCLFE LIKRKDVVLK VSVLRAAEYA AMVHQKKKYT SVENAHEDEE DVKPDIVGLF  360
GNGAPRSHEV SGKENAEVVD SGTLYCSRMI KKILLSRETK RAIKAARALK IENPAFMVIL  420
QRHNMHNYIV VKTPTRTMCS PGLEDFPRHV PAKFVENHLL GCTEFINLKA SGLKKWRVRC  480
SYREPPSQTK KISTGWNAFS KDNDLKVGDV CVFELIKSEG VVLKASIFRE SDYAKNEASY  540
DIAGYDSRFQ FQRN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169180KRKSVANAKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-47B3 family protein