PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09056

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 609aa MW: 65632.8 Da PI: 6.8544

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09056	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.8	4.6e-24	182	225	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v + +k+CErH+hrgr rsrk++e Ro07_G09056 182 DPEPGRCKRTDGKKWRCSRDVAPEQKYCERHMHRGRPRSRKHVE 225 79****************************************97 PP
2	QLQ	47.9	4.2e-17	88	120	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FT+ Q+ +L++Q+++yKy++a +PvP +Ll++ Ro07_G09056 88 PFTNLQWKELERQAMIYKYMMAALPVPRDLLFP 120 8*****************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MMMMVHHDNR GRPDQRCDGG DGPTCNRPPG AAAAAAAAAA VGSSNSSSGG SGSRALQPFQ 60 YIANSNTHHH TTTTFRSPGG MTTALGFPFT NLQWKELERQ AMIYKYMMAA LPVPRDLLFP 120 TTSSASAPTI SQSPCNFTYQ QLCFSSLQIN KHSFLGLGLV LTGLSFAVSG GGFNLRLSNS 180 TDPEPGRCKR TDGKKWRCSR DVAPEQKYCE RHMHRGRPRS RKHVEIHANQ TTTAKRVRCD 240 NSRSLPTLSP STLPNPTQEM NKNGYPTQFF GSTVQSFHQT DMFEDKAVVK SATFGSSDRE 300 SRGVEWMMKG ESTPMRSPEA QWHDLMQSKT ELSCSRIPYF DANSSVFGQR SEEESFLNLN 360 SYTNFNAGDG HHHQQDGGDC NMFLHPDVVA LENPLLEETP RSFIDAWSKN DNGDNNSSVP 420 SSGQLSPSSL TLSMGGYNSI SDEMGQTQMS LGGNNGNGNG IKPQISTWLT PAAWVSSPPG 480 GPLAEVLKPT TSAASNPSSP MTNNGNHGEF SSPLGITVSS SPSGVLQKTF ASLSDSSGNS 540 SPNLTSLKAK TETFFDFRDD FDLSLRGLCL GALCDRILAL AEAVAAIGGT DDDDILVFSN 600 GGLNDKSKV

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MMMMVHHDNR GRPDQRCDGG DGPTCNRPPG AAAAAAAAAA VGSSNSSSGG SGSRALQPFQ  60
YIANSNTHHH TTTTFRSPGG MTTALGFPFT NLQWKELERQ AMIYKYMMAA LPVPRDLLFP  120
TTSSASAPTI SQSPCNFTYQ QLCFSSLQIN KHSFLGLGLV LTGLSFAVSG GGFNLRLSNS  180
TDPEPGRCKR TDGKKWRCSR DVAPEQKYCE RHMHRGRPRS RKHVEIHANQ TTTAKRVRCD  240
NSRSLPTLSP STLPNPTQEM NKNGYPTQFF GSTVQSFHQT DMFEDKAVVK SATFGSSDRE  300
SRGVEWMMKG ESTPMRSPEA QWHDLMQSKT ELSCSRIPYF DANSSVFGQR SEEESFLNLN  360
SYTNFNAGDG HHHQQDGGDC NMFLHPDVVA LENPLLEETP RSFIDAWSKN DNGDNNSSVP  420
SSGQLSPSSL TLSMGGYNSI SDEMGQTQMS LGGNNGNGNG IKPQISTWLT PAAWVSSPPG  480
GPLAEVLKPT TSAASNPSSP MTNNGNHGEF SSPLGITVSS SPSGVLQKTF ASLSDSSGNS  540
SPNLTSLKAK TETFFDFRDD FDLSLRGLCL GALCDRILAL AEAVAAIGGT DDDDILVFSN  600
GGLNDKSKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	6e-33	GRF family protein