PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09461
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 277aa    MW: 31135.1 Da    PI: 6.0663
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09461genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.3e-35251152101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k+ll++i+
   Ro07_G09461  25 FLSKTYQLVDDPAIDDVISWNADGLSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVIPDR---------WEFSNDCFRKGEKRLLCDIQ 112
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
   Ro07_G09461 113 RRR 115
                   *96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MAPPPVEQNG ESTSGESQRG SPTPFLSKTY QLVDDPAIDD VISWNADGLS FVVWNPTVFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVIP DRWEFSNDCF RKGEKRLLCD IQRRRMVVTA  120
TAKPRISPAY SGEEQVTSSS SSPSQLVDEN ERLRKENMQL TKELAEIKSL CHNIFTMVSN  180
YACAKSEGGF PELKPLDLMP VKSFPGEGGE EMSPKLFGVE LGVKRAREVG GGEPPEEDET  240
DLRLQLPSGG GIKSEPSDVD HHDMPWLKQC HRANQRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-81HSF family protein