PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09485

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 144aa MW: 16276.4 Da PI: 7.7531

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09485	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.4e-41	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C++dC+++pyfp+++p++f+ vh+++Gasnv k+l++lp + r++a+++l+yeAe r++dPvyG++++i++lqqql++++ ela+++ Ro07_G09485 5 RCAACKYLRRRCPSDCIFSPYFPSNNPQRFETVHRIYGASNVAKMLEQLPSSLRPQAAETLCYEAESRIQDPVYGCAAIIFQLQQQLHNTECELAKTR 102 6**********************************************************************************************999 PP DUF260 99 ee 100 +e Ro07_G09485 103 AE 104 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence
MVNGRCAACK YLRRRCPSDC IFSPYFPSNN PQRFETVHRI YGASNVAKML EQLPSSLRPQ 60 AAETLCYEAE SRIQDPVYGC AAIIFQLQQQ LHNTECELAK TRAEIAVIRS NGHGQESDIQ 120 LMSIDQVHQQ DRVGSSSKAP NWFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	1e-51	LBD family protein