PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09490
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 230aa    MW: 25165.9 Da    PI: 4.8866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09490genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-1871121155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr++  +g+Wv+e+r+p   +k++r++lg+f tae+Aa+a++ a+ +l+g
  Ro07_G09490  71 PVFRGVRRRN-SGKWVCEVREP---NKQTRIWLGTFPTAEMAARAHDVAAIALRG 121
                  579****888.8******9998...336*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MDGFSTFTHY YDHHTHYPVG SDLPESSSAS DNNSGGGGVG RMTLSDEEVL LAATYPKKRA  60
GRKKFKETRH PVFRGVRRRN SGKWVCEVRE PNKQTRIWLG TFPTAEMAAR AHDVAAIALR  120
GRSACLNFAD SAWRLPVPAS TSAKDIQTAA AEAAEAFRPT EEESEVVSEA AAAAESEPVF  180
CMDEEFGMPG LLANMAEGMC LPPPHYFGDN GYGDDDMETY ADVSLWSYSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-68ERF family protein