PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09502

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 334aa MW: 34792.9 Da PI: 8.3362

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09502	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.5	2e-37	66	170	1	104
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaaks 97 +a+k+++++++hTkv+gR+RRvR++a caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ ++ + +s++ ++ + s+ + Ro07_G09502 66 PAKKRSSTKDRHTKVEGRGRRVRMPAACAARVFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAVsVGGTLKIPTSSPARPNGEVSERLR 163 5899*************************************************************777774443223333333333333333333322 PP TCP 98 kksqksa 104 kk+++++ Ro07_G09502 164 KKRKRQS 170 2222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MDANQMPSLE ENNGLINPTD YSSYDSNPSV SDPKVPGTAP SMKDEFDEGS LSMGLIPVPV 60 SAALVPAKKR SSTKDRHTKV EGRGRRVRMP AACAARVFQL TRELGHKSDG ETIRWLLEHA 120 EPAIIAATGT GTVPAIAVSV GGTLKIPTSS PARPNGEVSE RLRKKRKRQS NSDFMDVNDL 180 SSVSSGLAPI APMSCGGGGA LVPMWQLGAN VPAGSFFMFP NSGWAIPATD SISAHQIFNL 240 QGRPISNFVS ALQSEVQGCD VQATSGSISS GGGGGSCSSS LGANNSNAVS SSDTSATTAA 300 PISTTSHTQL LRDFSLGIYD KREPRVQGGF SGRV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	168	RKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	4e-65	TCP family protein