PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G09508
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26944.8 Da    PI: 9.7806
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G09508genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.9e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+++e+ss
  Ro07_G09508  9 KRIENVTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRIHEFSS 59
                 79***********************************************96 PP
2K-box72.31.5e-2489175995
        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                  + ++++ +l++e+ak+ k+ie L+ +qR+llG dL+s+s +eL+q+ +qLe+sl+++R++K +ll+eqi++l++k + l een +L+
  Ro07_G09508  89 VRTEQYTQLKNESAKMAKQIEILEASQRRLLGHDLDSCSAQELHQISDQLERSLRNVRERKAHLLKEQIQQLKEKGRLLLEENAKLH 175
                  6778999******************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MVRGKIEMKR IENVTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRIHEFSSS  60
DMQQTIKRYH KHAKAVQTNT FEVEKYMQVR TEQYTQLKNE SAKMAKQIEI LEASQRRLLG  120
HDLDSCSAQE LHQISDQLER SLRNVRERKA HLLKEQIQQL KEKGRLLLEE NAKLHIECCA  180
RPWQQHLVEE KGGGGAAASY SRMNSSQSSS SQTISNSDQL ETRLFIGPPV MRCE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-71MIKC_MADS family protein