PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G11386

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 257aa MW: 28305.8 Da PI: 9.5305

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G11386	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79	4.4e-25	87	131	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Ro07_G11386 87 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 131 79****************************************986 PP
2	QLQ	67.4	3.4e-23	25	61	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk Ro07_G11386 25 SPFTMSQWQELEHQALIFKYMMAGMPVPPDLVLPIQK 61 89*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MNSCSSGGGG GGTGNLMGMG MGMRSPFTMS QWQELEHQAL IFKYMMAGMP VPPDLVLPIQ 60 KSFESISQRF FHHPTMGYCS FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR 120 GRNRSRKPVE SQTMTQSSST VTSLTVTGTS SGTGSFQNLP LNAFGNTQGT GTGTNQSHYQ 180 IDSIPFGIPN KDYRYLQGLK PEIGEHSFLS DTSGSNRGLQ MDSPLDSTWP LMPSRVASFP 240 ASKSVYGRWA GHESTPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-46	GRF family protein