PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G11489

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 523aa MW: 58878.3 Da PI: 7.6736

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G11489	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.5	1.4e-15	199	273	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+ +GFs+ + + +++k +g i++ +f Cs+e +++++ ++ C+a+l++++++ ++w+vtk+ ++HnH++ Ro07_G11489 199 LYDAYARCAGFSTHVGQFSRTKPDGPIVTWEFACSREVFKRKNVES--------------CNAMLRIERKDAKTWVVTKFIEDHNHSME 273 69************************************999877..............************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MPKIESPAET VTQLRTRHNC ETVKIKSENV NRKPNKGSKA ETKTTDCLSW VSGVCTHTRT 60 RTQTRLQLET ENWSSMPLLT PKLTNPKTHS VNRNQCHHNS HFLIRKLRPQ ETSLFYNRFS 120 WDNHVELFLE SVMDAEVLVD VAAENREHHV TENTESDKGE KQYVNENFAG REIVIQDDDG 180 NAKPYVGMEF ESEDTAKTLY DAYARCAGFS THVGQFSRTK PDGPIVTWEF ACSREVFKRK 240 NVESCNAMLR IERKDAKTWV VTKFIEDHNH SMESPNKVHY IRPRRHFAGA TKNASETLDV 300 TSDVPVSMDG NHVPYEPNRG DGGKKIVDLK KNVAKVAPHS SQGSGSILEE TMKKTPLPFG 360 ELAPPLWPWQ EALPHRFNLN DVGVPVSDTN QPSMAGSIHP DGGHPDNTVV LTCFKSMTWV 420 IENKNSASSG KVAVINLKLQ DYGKNPAGET DVQFRVTRVT LEPMLRSMAY IGQQLSAPAN 480 RVAVISLKLQ DTNTTSGETE VKFQVSRDTL DSMLRSMAYI RVE

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MPKIESPAET VTQLRTRHNC ETVKIKSENV NRKPNKGSKA ETKTTDCLSW VSGVCTHTRT  60
RTQTRLQLET ENWSSMPLLT PKLTNPKTHS VNRNQCHHNS HFLIRKLRPQ ETSLFYNRFS  120
WDNHVELFLE SVMDAEVLVD VAAENREHHV TENTESDKGE KQYVNENFAG REIVIQDDDG  180
NAKPYVGMEF ESEDTAKTLY DAYARCAGFS THVGQFSRTK PDGPIVTWEF ACSREVFKRK  240
NVESCNAMLR IERKDAKTWV VTKFIEDHNH SMESPNKVHY IRPRRHFAGA TKNASETLDV  300
TSDVPVSMDG NHVPYEPNRG DGGKKIVDLK KNVAKVAPHS SQGSGSILEE TMKKTPLPFG  360
ELAPPLWPWQ EALPHRFNLN DVGVPVSDTN QPSMAGSIHP DGGHPDNTVV LTCFKSMTWV  420
IENKNSASSG KVAVINLKLQ DYGKNPAGET DVQFRVTRVT LEPMLRSMAY IGQQLSAPAN  480
RVAVISLKLQ DTNTTSGETE VKFQVSRDTL DSMLRSMAYI RVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-63	FAR1 family protein