PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G13016

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 191aa MW: 21169.2 Da PI: 9.8092

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G13016	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.4	3.7e-13	22	52	13	43
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsst 43 + R++ i+KKAeEL +LC+++v+v++f + Ro07_G13016 22 YRDRKKNIFKKAEELAILCGIDVCVVMFRPA 52 568************************9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MAPPPPNRNM ELLPNQRFCK MYRDRKKNIF KKAEELAILC GIDVCVVMFR PADKKTSTSQ 60 PAAAAATWPQ DCIQVNRIIR KYKAMLPAST NSPSSSTTPP AIKDTTSTPS SSTSSPSQNV 120 LEKRNNINLD LCLSLPGSYD SKMGSLDKVK GKKKLHAHDD ENINSQEGRI EDWIIQIRRG 180 YGYGDGVRDA A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	9e-10	M-type_MADS family protein