PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G13031

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 887aa MW: 100089 Da PI: 8.727

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G13031	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.5	7.4e-13	679	718	4	43
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +n++ r+ + R+ ilKKAeEL +LC+++v+vi+f + Ro07_G13031 679 SNQRSRKKMYRDRKLNILKKAEELAILCGVDVCVIMFQPA 718 89999999****************************9776 PP

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence
MPPHSPPQKF SFFYGHRKPS RNRPTVRGSG LFSNLLSPPK PKPSATESQP FDLSKWHPHQ 60 SPPSTSSNPT VNTRSLSFLS PIARFVLDAF RKNRNHWGPP VVSELQKLRR VTPDLVAEVL 120 KVQDDAVLAS KFFHWAGKQK GFKHTFASYN ALTYCLNRTD RFRSADQVPE LMDSQGKPPT 180 EKQFEILIRM HSDANRGLRV YYVYEKMKKF GVKPRVFLYN RIMDALVKTG HLDLALSVYQ 240 DFLGDGLVEE SVTFMILIKG MCKFGRVDEM LQLLDRMRLN LCKPDVFAYT AMIKVLVSEG 300 DLDGCLKVWD EMRRDRVEAD AMAYVTLVTG LCKGGRVEKG YELFREMKQK GFLIDRAIYG 360 VLVEGFVADR KVGAACDLLK DLVGSGYRAD LGIYNSLIKG LCDVKRVDKA YKLFRVTIQE 420 GLEPDFATVN PILVSYAEMR RMDNFCKLLA QMEEFGYPVT DDISKFFSIL AEKEDGLMMA 480 LEVFEDLKVK SYSTVGIYNI FIGALYKFDK VKKALSLFDE MKGFDFQPDS STYSSVIMCY 540 IEDGDLHEAC ACHNKIIEMS CVPSISAYCS LAKGLFNVGE IDAVMLIVRD CLASVTSGPM 600 AFKYSLTVLQ ACRSNNAEKV IDVLNEMMQQ GCPPDDVIYS AIISGMSKHG TIEEARKMLD 660 NKYKYRAPPP CNRNMELLSN QRSRKKMYRD RKLNILKKAE ELAILCGVDV CVIMFQPADK 720 KTSTSTQPAA AAETWPQNLT QVNRIIRKYK AMLPASTNSP SSSTAPPAIK DTTSTPSPSS 780 SSRSVLEKRN NINLDLSLSL PGSYDSKMKC LDKGKRKLHA DDDENIDSQE GMEMQYRYPT 840 IWNAAGKVEL YDDKWVRFDE HEAKLASLVA KQKAITERIA SLEANHV

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence

MPPHSPPQKF SFFYGHRKPS RNRPTVRGSG LFSNLLSPPK PKPSATESQP FDLSKWHPHQ  60
SPPSTSSNPT VNTRSLSFLS PIARFVLDAF RKNRNHWGPP VVSELQKLRR VTPDLVAEVL  120
KVQDDAVLAS KFFHWAGKQK GFKHTFASYN ALTYCLNRTD RFRSADQVPE LMDSQGKPPT  180
EKQFEILIRM HSDANRGLRV YYVYEKMKKF GVKPRVFLYN RIMDALVKTG HLDLALSVYQ  240
DFLGDGLVEE SVTFMILIKG MCKFGRVDEM LQLLDRMRLN LCKPDVFAYT AMIKVLVSEG  300
DLDGCLKVWD EMRRDRVEAD AMAYVTLVTG LCKGGRVEKG YELFREMKQK GFLIDRAIYG  360
VLVEGFVADR KVGAACDLLK DLVGSGYRAD LGIYNSLIKG LCDVKRVDKA YKLFRVTIQE  420
GLEPDFATVN PILVSYAEMR RMDNFCKLLA QMEEFGYPVT DDISKFFSIL AEKEDGLMMA  480
LEVFEDLKVK SYSTVGIYNI FIGALYKFDK VKKALSLFDE MKGFDFQPDS STYSSVIMCY  540
IEDGDLHEAC ACHNKIIEMS CVPSISAYCS LAKGLFNVGE IDAVMLIVRD CLASVTSGPM  600
AFKYSLTVLQ ACRSNNAEKV IDVLNEMMQQ GCPPDDVIYS AIISGMSKHG TIEEARKMLD  660
NKYKYRAPPP CNRNMELLSN QRSRKKMYRD RKLNILKKAE ELAILCGVDV CVIMFQPADK  720
KTSTSTQPAA AAETWPQNLT QVNRIIRKYK AMLPASTNSP SSSTAPPAIK DTTSTPSPSS  780
SSRSVLEKRN NINLDLSLSL PGSYDSKMKC LDKGKRKLHA DDDENIDSQE GMEMQYRYPT  840
IWNAAGKVEL YDDKWVRFDE HEAKLASLVA KQKAITERIA SLEANHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64100.2	2e-34	NAC family protein