PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G13242

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 232aa MW: 26522.9 Da PI: 9.1978

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G13242	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.8	4.4e-12	92	143	5	50
G2-like 5 rWtpeLHerFveaveqLGG..sekAtPktilelmkvk....gLtlehvkSHL 50 Wt e H+r veav qLGG + kAtPk++l+lm + gLt + HL Ro07_G13242 92 SWTLEHHRRVVEAVIQLGGlsNSKATPKAVLKLMAEEdrrrGLTARMISHHL 143 7****************44469********865333389999998888 PP
2	Myb_DNA-binding	22.8	2.2e-07	92	145	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg.....kgRtlkqcksrwqk 46 +WT e + + v+av qlGg t+k++ + m g+t+ ++ +++ Ro07_G13242 92 SWTLEHHRRVVEAVIQLGGLsnskaTPKAVLKLMAeedrrRGLTARMISHHLSE 145 7***************88************************99999865 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MATPRMFEWT LEHHKRFLDT YILLDGDNEK VGLYPVLRAE LLTLVGCCCT SLFLVSHFIL 60 LSELQKKSES LFCSKEVSFK GLYVAPKKLS SSWTLEHHRR VVEAVIQLGG LSNSKATPKA 120 VLKLMAEEDR RRGLTARMIS HHLSELLRLQ KETQRLIAIG SKGGEEGIEL SIKELEFLVF 180 EGLPQQQNSK KYTHVDDPLL RQHLGLLEQR NISHRISLHI IKSERELLKA FG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.4	1e-06	G2-like family protein