PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G13245

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 189aa MW: 21485 Da PI: 9.0292

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G13245	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.6	2.4e-12	98	149	5	50
G2-like 5 rWtpeLHerFveaveqLGG..sekAtPktilelmkv....kgLtlehvkSHL 50 Wt e H+r veav qLGG + kAtPk++l+lm +gLt + HL Ro07_G13245 98 SWTLEHHRRVVEAVIQLGGlsNSKATPKAVLKLMAEedhrQGLTSRMISHHL 149 7****************44469********752222699999999998 PP
2	Myb_DNA-binding	22.4	2.9e-07	98	149	3	44
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT.....TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg.....kgRtlkqcksrw 44 +WT e + + v+av qlGg t+k++ + m +g+t ++ +++ Ro07_G13245 98 SWTLEHHRRVVEAVIQLGGLsnskaTPKAVLKLMAeedhrQGLTSRMISHHL 149 7***************88***************999999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence
MHLRSMATPR MFEWTLEHHK QFLDTFILLG GDYKKVGAFE VLRAELLSLV GCCCTSFFLV 60 NHFMLLEQLQ KKSESLFCNS NKVSLKGLYV APIKLSSSWT LEHHRRVVEA VIQLGGLSNS 120 KATPKAVLKL MAEEDHRQGL TSRMISHHLS ELSRLQKETQ RLISSRPSCV QEVDDRISIY 180 LNTSANALI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	3e-07	G2-like family protein