PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G13281
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 579aa    MW: 65489.3 Da    PI: 7.0422
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G13281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.53.4e-139494651374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL  cA +v+sg+ e+a+  L+++s+las dgd+mqR+aayfteALa r+++  ++lykal++++ s  + +ee+++ +lf+e++P+lk+s++++
  Ro07_G13281  49 LIQLLQGCAYHVASGSIEQANVWLEQISQLASADGDTMQRIAAYFTEALADRMLKGLPGLYKALNSTKLS--SIAEEIHIKRLFFELCPFLKLSYVIT 144
                  6899************************************************************999998..59************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD+   +++QW++L+q+L++Rpegpp+lRiTg+++    +ke l +++ rL + Ae+ ++pf+fn+ ++++le+l++e+Lrv
  Ro07_G13281 145 NQAIVEAMEGEKMVHIIDLHSFEPAQWINLIQTLNTRPEGPPHLRITGIHE----QKEVLDQMALRLIEEAEKHDIPFQFNP-IVSKLENLDVESLRV 237
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..................................................desvsleserdevLklvkslsPkvvvvveq 244
                  k+gEalaV++vlqlh+ll                                                    s+s + +  ++L+++++lsPk++v++eq
  Ro07_G13281 238 KTGEALAVCSVLQLHSLLatdddmtrrksplatknlqkvlhmnhltlgewlekdpigeyglspdsslsPLSLSASPKMGSFLSALWGLSPKLMVITEQ 335
                  ***************************************************************99977333334446777****************** PP

         GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                  e++hn++++++r++eal+yy+alfd+le++++r+s er+kvE++l+g+ei+n+++ceg++r+erhe+lekW  r+e +GF+ v+ls++  +qak +lr
  Ro07_G13281 336 ESNHNGHTLMDRMMEALHYYAALFDCLESTVSRASMERQKVEKMLFGEEIKNIISCEGTDRKERHEKLEKWILRVELSGFGRVQLSYHGRMQAKKMLR 433
                  ************************************************************************************************** PP

         GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   ++ dgy+++e++g+lv++W+drpL+svSaWr
  Ro07_G13281 434 DYGYDGYEIKEDNGCLVICWHDRPLFSVSAWR 465
                  *******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    
MAQEDGSPVT SPAMYFPGLG SPYPWLSPGI GSPYPWLREL KSEQRGLCLI QLLQGCAYHV  60
ASGSIEQANV WLEQISQLAS ADGDTMQRIA AYFTEALADR MLKGLPGLYK ALNSTKLSSI  120
AEEIHIKRLF FELCPFLKLS YVITNQAIVE AMEGEKMVHI IDLHSFEPAQ WINLIQTLNT  180
RPEGPPHLRI TGIHEQKEVL DQMALRLIEE AEKHDIPFQF NPIVSKLENL DVESLRVKTG  240
EALAVCSVLQ LHSLLATDDD MTRRKSPLAT KNLQKVLHMN HLTLGEWLEK DPIGEYGLSP  300
DSSLSPLSLS ASPKMGSFLS ALWGLSPKLM VITEQESNHN GHTLMDRMME ALHYYAALFD  360
CLESTVSRAS MERQKVEKML FGEEIKNIIS CEGTDRKERH EKLEKWILRV ELSGFGRVQL  420
SYHGRMQAKK MLRDYGYDGY EIKEDNGCLV ICWHDRPLFS VSAWRFRRYE ILSISSSATH  480
SKHQKVVQHT HIVLDNSISS LLTDGKRLCQ CITPCIPENP TASDDRHLSY GIHKRIPPKN  540
AKSTAIVHTL YESKIQDHEQ ARVMLRSKSI NALSSSYKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein