PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G13611

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

YABBY

Protein Properties

Length: 222aa MW: 24763.4 Da PI: 8.1623

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G13611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	248.9	9.5e-77	15	185	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkee..lleelkveeenlksnvekeesastsv 96 d+ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++ + a + hl++s+ + llee +++ +n +n+ + +++ Ro07_G13611 15 DHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRGLILpAAANQLHLGHSFFTPqnLLEEIRNAPSNAFTNQ--PNMMMNES 110 78899******************************************998851455566999998766347777777777665555..45566666 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++ + ee+p++pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Ro07_G13611 111 FMPMMIRGGVEEIPKPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 185 67778999****9989***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MSAAASSNTV FSPPDHLSPS DQLCYVHCNF CDTVLAVSVP CSSLFKTVTV RCGHCSNLLS 60 VNMRGLILPA AANQLHLGHS FFTPQNLLEE IRNAPSNAFT NQPNMMMNES FMPMMIRGGV 120 EEIPKPPPVV NRPPEKRQRV PSAYNRFIKE EIQRIKAGNP DISHREAFSA AAKNWAHFPH 180 IHFGLMPDQP VKKANMRQQD GEDMLIKENG FLSAPANLEH KY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	4e-83	YABBY family protein