PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G14616
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 245aa    MW: 28144.8 Da    PI: 8.4163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G14616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32171228158
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh
  Ro07_G14616 171 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 228
                  59******************************************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MEGDHQRVVP NYNLHQQVSF TGSTPPAQQA IHHELGFVQF EDHHHHHHHH HQVLSFLAPS  60
LTQQPQPPSS HRHQTAAANS SVTVTTAAAT NTDMGFSHSH NHFTRPSWNN NDQVGTLDPK  120
GVSDENGTGN ASDCSNSWWR SSNSDKSKMK VRRKLREPRF CFQTRSDVDV LDDGYKWRKY  180
GQKVVKNSLH PRSYYRCTHN NCRVKKRVER LSEDCRMVIT TYEGRHNHIP SDDSNSSEHE  240
CFTSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156KVRRKLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-71WRKY family protein