PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G15048
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 991aa    MW: 111066 Da    PI: 7.9146
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G15048genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.3e-14724807797
                  .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +vl++  l++p  f+e+++gk +++    l++    +W v +  +k +++++++kGWk+Fv  n+Lk g+f+v++++++s+f  +v ++
  Ro07_G15048 724 DDSVLQKEKLTIPQGFCEHFDGKVPQQ--CHLQTVA-GTWLVDV--KKIREEFFFKKGWKDFVLGNRLKLGEFLVLHYTRNSKF--YVEIY 807
                  568999999********8886665554..6666654.59*****..*********************************99999..88775 PP
2B338.52.1e-12904980990
                  HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +v k   +  p++f+ +++ k ++  +++l    ++  W+v+ i+ + ks+r  +++GW +Fvk+n+L+egD++ F+l+++++ 
  Ro07_G15048 904 HVVKGP-MLTPRSFMGNMQ-K-PN--KVKLHVsNRSMAWDVNWIHhDTKSSR--FSGGWPSFVKQNKLQEGDVCDFELISNTNN 980
                  555555.444999994443.3.34..455555357799*****886666656..89**********************986443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    
MKRKEALVNL FKACNSPKSL AQLHSQTLKA GLSNDSFFAT KLSALYAKHE SLGYARKVFD  60
ETPHRSVYLW NATLRSYCRE KQWEETLCLF HKMLSDQKPD NFTVSIALKA CAGLRALGYG  120
KIVHGFVKRS EKIALDVFVG SALIELYSKC GQMGEALKVF DQFSQPDVFL WTSMVTGYEQ  180
NGNAVEALEF FSRMVTVGHV NPERVTLVSA VSACAQLSNV RLGSSVYGVA IRNGFDSDLC  240
IGNSLLNLYA KTGSIKTATS LFWKMPEKDV ISWSSMIACC THNGAVLEAL NLFNEMIDRG  300
VEPNSVTVTS AVQACAVACN LEEGKKIHEL ATRKGFELDV IVATALIDMY MKCSAPQEAV  360
DLFKRMPEKD VVSWAALLSG FAQNGMSYKS MRVFHDMLLD ETQPDAVAMV KILAACSELG  420
NLQQALCLHA YVIKTAFEDN IFVGASLIEL YSKCGCVDKA IRLFEGMAYK DVVIWSAMIA  480
GYGIHGQGGE ALKVFDDMVK HSAVKPNDLT FISILSACSH SGLVEQGLGI FNMMLHQYQL  540
KPRPEHYGIL VDLLGRTGEL DKAMEIVERM SNPATPHAWG ALLGACRIHN NIKLGEVVAK  600
RLLQLDPNHA GYYILLSNIY AMDDKWENVS DLRTFIREKG LKKMLGQSIV EAGSEIHSFV  660
AGDRFHPESD QIYRLLRKLE VKMRQEAKLN QTQRKVAKPT LMGSCSRRRE DKDPEIPSFY  720
KCVDDSVLQK EKLTIPQGFC EHFDGKVPQQ CHLQTVAGTW LVDVKKIREE FFFKKGWKDF  780
VLGNRLKLGE FLVLHYTRNS KFYVEIYGDN YCNTRSTARK MDRSLLDDEY DDDAVIVIES  840
DSETSINTVE SDTQNNELSL AAEIEWRREF SCGEKLSRRG RVGKPATVSP SGNPCFSMRM  900
CQTHVVKGPM LTPRSFMGNM QKPNKVKLHV SNRSMAWDVN WIHHDTKSSR FSGGWPSFVK  960
QNKLQEGDVC DFELISNTNN VAVMKYSSVT V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.26e-21NAC family protein