PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G16586
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 342aa    MW: 38466.7 Da    PI: 7.3266
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G16586genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12274319655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l P      +k  + a++Le+AveYIk+Lq
  Ro07_G16586 274 SIAERMRRTRISERMKKLQDLFPDM----DKQINTADMLELAVEYIKDLQ 319
                  689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MRYRSAPSSV LVDLVDNNGG GAGCEDFRDF RFPRPSSPEV ETVLARFISS CNAPDHLNEN  60
HVFEERPVKQ ELGDSVSKQN GYSNSPQMMY QAQQQVHDLD NSSSFGFNLM KDASSFRVGN  120
GTNGEASPST SRLNTQYNFS SGSPPYSREP RRLPRIAEIG NGNIGEGSEP DQSLGNATNG  180
SSSHYMPDYP NDTWDNSAFL DLKRGRDNDG NKFSTTTALD TQNVDFGHRN HRLTHHLSLP  240
KHFEMPAMEK LLHFDDSIPC KIRAKRGFAT HPRSIAERMR RTRISERMKK LQDLFPDMDK  300
QINTADMLEL AVEYIKDLQK QVKTLKDTKA KCSCSTTQQF GC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-50bHLH family protein