PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G17381
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 235aa    MW: 26327.9 Da    PI: 6.1116
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G17381genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-18139173135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Ro07_G17381 139 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 173
                  *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MEDMYGVSSS SASASTQAQD YFPVDDLLDL SNDEIFSNSS TSSSTDSYSN HHHYAPPPPQ  60
HPTALFHPPT TDFTNALCLP SEDAAELEWL SRFVDDSFTD FPAPELSGSM SLSNDKSFPN  120
RGHTKPMRQA EGSESIRRCT HCASEKTPQW RTGPLGPKTL CNACGVRYKS GRLVPEYRPA  180
ASPTFVLTQH SNSHRKVMEL RRQKEVSQQP PEEQQSHQQQ QFYLHPNGFQ VYFGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-64GATA family protein