PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17388

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 510aa MW: 55708.6 Da PI: 7.7991

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17388	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.7	1.4e-15	315	360	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Ro07_G17388 315 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 360 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MSIFFPPQLL YLWSLSSDLL RKQSLSLTFM TLGSNRTCVV FIFSLKMSQC VPSWDLDDCS 60 PPPRLSLRSH SNSTAPDVPM FDYEVAELTW ENGQVAMHGL GLPRLPSKPL SWDKPRANGT 120 LESIVNQATC TLPQFSKPPF DNTITAAPGG GGNEILTWFD HHRTVATSAA APSNTMTMDA 180 LVPCANNHSD EPNSSHMIDT AVSMPGVLDT SATGVVNGCS TRVGSCSAAA TQDEDTRRPG 240 KRKGNVASVP ATPDWSSRSP SVSGSTFGMD SQHVILDTKE SDHDSRQAGD EEERKKRSTG 300 KSSVSTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ 360 AQVHMISRMN MPAMMLPMAM QQQLQMSMMA PRHMGMGIGM GMGMDMNMNT IGRPNMAGFP 420 AVLHPTAFMP MASWDGSASG AERLQAASTN VMPDHLSAFL ACQSQPMTMD AYGMMAAMYQ 480 QFHQQPAASI LASCIFMELR ATERPSSKDL

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MSIFFPPQLL YLWSLSSDLL RKQSLSLTFM TLGSNRTCVV FIFSLKMSQC VPSWDLDDCS  60
PPPRLSLRSH SNSTAPDVPM FDYEVAELTW ENGQVAMHGL GLPRLPSKPL SWDKPRANGT  120
LESIVNQATC TLPQFSKPPF DNTITAAPGG GGNEILTWFD HHRTVATSAA APSNTMTMDA  180
LVPCANNHSD EPNSSHMIDT AVSMPGVLDT SATGVVNGCS TRVGSCSAAA TQDEDTRRPG  240
KRKGNVASVP ATPDWSSRSP SVSGSTFGMD SQHVILDTKE SDHDSRQAGD EEERKKRSTG  300
KSSVSTKRSR AAAIHNQSER KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ  360
AQVHMISRMN MPAMMLPMAM QQQLQMSMMA PRHMGMGIGM GMGMDMNMNT IGRPNMAGFP  420
AVLHPTAFMP MASWDGSASG AERLQAASTN VMPDHLSAFL ACQSQPMTMD AYGMMAAMYQ  480
QFHQQPAASI LASCIFMELR ATERPSSKDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	243	RRPGKRK
2	319	324	ERKRRD
3	320	325	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-83	bHLH family protein