PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G17536
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20851 Da    PI: 9.6195
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G17536genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+s r++t+ kR++g++KK +ELS+LC+++++ i++s+
  Ro07_G17536 11 ITNNSARKTTYKKRKKGMMKKLSELSTLCGIDACAIMYSP 50
                 89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MARRKVKLAY ITNNSARKTT YKKRKKGMMK KLSELSTLCG IDACAIMYSP YDSQPEVWPS  60
PSGVENVLEK FKNIPEMEKS RKMLNQEGFL REMISKETEQ LKKVRKENRE KELRGVVFKS  120
LTTGIPQLQD LNFMDMDDLG RLINQKLDEI NSKKMALSEE ETENQNQTVQ SSCTNNACIS  180
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RRKVKLAYITNNSARKTTYKKRK
21732RKTTYKKRKKGMMKKL
32226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-48M-type_MADS family protein