PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18147
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 335aa    MW: 37737.2 Da    PI: 6.5965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18147genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.6e-153077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
      Ro07_G18147 30 KGLWSPEEDEKLMRYMLSNGQGCWSDIARNSGLQRCGKSCRLRWINYL 77
                     678*******************************************97 PP
2Myb_DNA-binding47.54.2e-1583126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l+++ +  lG++ W+ Ia++++ gRt++++k++w++
      Ro07_G18147  83 RGAFSPQEEHLIIHFHSILGNK-WSQIAARLP-GRTDNEIKNFWNS 126
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MRKPELSMGK DMKANTNSKN KTMTNNKLRK GLWSPEEDEK LMRYMLSNGQ GCWSDIARNS  60
GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EHLIIHFHSI LGNKWSQIAA RLPGRTDNEI  120
KNFWNSALKK RLKNNNISTS TSSPNESDHS SEPNVNIAGA PTTFIPMHKE HDMLMSMMYM  180
DSSSSSSSTS MQAINNNAFD PSFSMLDSST LLNYVNPTCL TQLPEGQYGD YGNYLEAGHK  240
MGIEGDLCLP PLETSRRSLL ENNNGQVVDN ISNNNIINHF HNNNNNNCFN NTASTMSFKL  300
DDGDIFGQAE AGGNLRMGEE WDFEGFMQDI SCFLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-68MYB family protein