PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18720
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 749aa    MW: 81620.3 Da    PI: 5.3373
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18720genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS238.52.9e-734196852277
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++L+++Ae +++g+  laq++Larl+++ sp g+p+qR+a+yf+eAL+  l+   ++  ++ + s+ s    + ++ a+k fse+sP+l+f+++t+N
  Ro07_G18720 419 IDQLVNAAELIETGNPLLAQEILARLNHQLSPIGKPFQRAAFYFKEALELLLNM--NNSHSSANLSPFS---LIYKIGAYKSFSEISPVLQFANFTCN 511
                  689*************************************************98..3344445555555...99************************ PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  qaIle+veg +rvH+iDfdi++G+QW+++lq+ a R+ ++ppsl+iT+++sp+ +++ el  t+e+L++fA+el++ fe +++  ++l++   + L +
  Ro07_G18720 512 QAILESVEGFNRVHVIDFDIGYGGQWASFLQEVALRNgGSPPSLKITAFVSPSMHDEFELAFTRENLKNFASELNLAFELEIVSIESLNSG-SWPLPL 608
                  *************************************66688****************************************866655554.788888 PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                  +  E +aV + l + ++ +++  l+     vL++vk+lsPk+v   e+ +d+++ +F +++++al+ ys+l++sl+a+++r
  Ro07_G18720 609 HGSEGVAVAVNLPIGSFSSSPFLLPL----VLRFVKQLSPKIVLSLERGSDRTDLPFPHQIIQALHSYSVLLESLDAQFHR 685
                  88888888888888888755666666....**********************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MVPKMGLEPR VVSSFKLKSF ESSSSLESSI EGLAVCFSSS IGLKFEVNPF MKAMPLPFED  60
FQGKGVLDFS SGCSDLLASP PAQSHRQQPQ KWKENCYVGS TEPTSVLDTR RSPSPPTSSS  120
TLSSSHGSGG GSGSTDTTPT TGLAAAPAGT GYENKQSQIG LQEAKCGPPL GMEDWESVLS  180
ESPGQEQSIL RLIMSDIEDP SLGLNKLLQS GGDSHQDLGF NIGFHDVVED QGYGAFEEPN  240
TGNLNLGMSS IVDPSLPATS CSEFPFNVQS NSATIFSASA NNLFPGSLPP GMFQHQQHLV  300
EPVDEKPQIF NPQMLMNQNP AMFMPLTYAQ LQDHHFLSPP PAKRHISGGF GTNNPAQRVP  360
FFNPGQDLLA RVQQQQQLQL LPQHLQHRPA MLATRDKMVN NVEGDKELMN NHQLHQAIID  420
QLVNAAELIE TGNPLLAQEI LARLNHQLSP IGKPFQRAAF YFKEALELLL NMNNSHSSAN  480
LSPFSLIYKI GAYKSFSEIS PVLQFANFTC NQAILESVEG FNRVHVIDFD IGYGGQWASF  540
LQEVALRNGG SPPSLKITAF VSPSMHDEFE LAFTRENLKN FASELNLAFE LEIVSIESLN  600
SGSWPLPLHG SEGVAVAVNL PIGSFSSSPF LLPLVLRFVK QLSPKIVLSL ERGSDRTDLP  660
FPHQIIQALH SYSVLLESLD AQFHRVPSRV LGATDSGWGF PCREETVFAC SRLAAEGSHI  720
GLSMEIVSSD GQVLLPITVP SQRLCKMRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-90GRAS family protein