PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18772
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family G2-like
Protein Properties Length: 260aa    MW: 29900 Da    PI: 10.8915
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18772genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like28.63.2e-09145202554
      G2-like   5 rWtpeLHerFveaveqLGGsekAtPk.....tilelmkv...kgLtlehvkSHLQkYR 54 
                   Wt e H+r v+av++LGG ++A P      ++l++m+    +gLt+  +  HL + R
  Ro07_G18772 145 TWTLEHHKRVVDAVTKLGGLDVAKPMeklavAVLRVMEEerrQGLTVWILTKHLRRLR 202
                  6************************633333588999752236999999999998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MNPCETTKIK RAEYSFYKDL IGNLAFFRNM FQLGVMGKQN PQTIEWTLEH HKLFMDTLLR  60
HGGFEKVGAR ASGVRDEVIK RVKGLTRGPM LYHVGQFQQL QKETRSLLCG RKATPHRKSC  120
CKLSVLVDDL VRDLKGLNME PKLSTWTLEH HKRVVDAVTK LGGLDVAKPM EKLAVAVLRV  180
MEEERRQGLT VWILTKHLRR LRDLQRGTQE AIVEAAVKKA QHGRVRRPKK VKLGRRREND  240
DQFLPRTMEK GAQPHDPLAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-07G2-like family protein