PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G19435
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 743aa    MW: 83437.2 Da    PI: 6.6296
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G19435genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.83e-1193707402374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++ L+ cA+a+++gd++  + lL+r++++asp gd mqRla +f+ +L+ar+a+s++++y+al +++ts    +++l+a++lf  ++P+ k+s++  N
  Ro07_G19435 370 RTILTFCAQAIAAGDQRTSNDLLKRIRQHASPVGDGMQRLACCFADGLEARMAGSGTQIYRALITKPTS---AADVLKAYHLFLAACPFRKLSNFFSN 464
                  678999************************************************************999...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  ++I++  ++++r+HiiDf+i++G+QWp+L+q L+sRp+gpp++RiTg++ p++g   +e++eetg+rLa++Ae+++vpf+fn+ +a++++++++e+L+
  Ro07_G19435 465 KTIMNVSQKATRLHIIDFGIMYGFQWPSLIQRLSSRPDGPPKVRITGIDFPNPGfrPAERVEETGRRLANYAETFKVPFQFNA-IAQKWDTIKIEDLK 561
                  *****************************************************9*****************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E+l+Vn+ ++l +llde+v +es+rd vL+l+++++P+v ++   +  ++++ Fl rf eal ++s+lfd+l++ +pr+  er+ +Ere++gre
  Ro07_G19435 562 LNRDEVLVVNCCYRLRNLLDETVVVESPRDIVLNLIRKMNPDVYILGVVNGAYSAPFFLSRFREALFHFSTLFDMLDTCVPRDIPERMLIEREIFGRE 659
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++nv+aceg+er+er et+++W++r ++aGF+++pl+++++k ak  l+ ++ + + ++e+  +l++gWk+r ++++S+Wr
  Ro07_G19435 660 AMNVIACEGSERIERPETYKQWQMRNRRAGFTQLPLNQEIVKIAKDRLHAYNHRDFVIDEDGRWLLQGWKGRIVYALSSWR 740
                  ****************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MVMDQSLSEL YGSSNELKEI RDQALLDSMN KKLDSGFRNG SGSSKFLGYN YASTVQVPPT  60
SIPSDLAPSL SMSPDGDSPE DCDFSDVVLK YINQMLMEED MEEKTCMYQE SAALQAAEQS  120
FYELIREKHP LPLSNLTPQN HESPDDSHSL HSSCCSNTST STSSSNRDCD LREFKYLNVA  180
SQSTSQSSHA SSNGTGNIVD GFVDSPVSTL RVPDFFNETD SIMQFKRGFE EASKFLPNGN  240
SLIVDLENNT LLFQEPKAEA TYTIVKVDKK NENEYSSVQS RGKKHPHHDD VILEGERSTK  300
QSSVSTESAV SPEMFDMVLL NSGKGESALR EALQSGTNKN VPQNGQSKGP SGGKSRGKKQ  360
GGKKDVVDLR TILTFCAQAI AAGDQRTSND LLKRIRQHAS PVGDGMQRLA CCFADGLEAR  420
MAGSGTQIYR ALITKPTSAA DVLKAYHLFL AACPFRKLSN FFSNKTIMNV SQKATRLHII  480
DFGIMYGFQW PSLIQRLSSR PDGPPKVRIT GIDFPNPGFR PAERVEETGR RLANYAETFK  540
VPFQFNAIAQ KWDTIKIEDL KLNRDEVLVV NCCYRLRNLL DETVVVESPR DIVLNLIRKM  600
NPDVYILGVV NGAYSAPFFL SRFREALFHF STLFDMLDTC VPRDIPERML IEREIFGREA  660
MNVIACEGSE RIERPETYKQ WQMRNRRAGF TQLPLNQEIV KIAKDRLHAY NHRDFVIDED  720
GRWLLQGWKG RIVYALSSWR AAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein