PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G19638

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 464aa MW: 50473.6 Da PI: 8.7569

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G19638	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	67.2	2.8e-21	322	384	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++elkrerrkq+NRe+ArrsR+RK+ae++eL++kv++L a N +Lk+e+++l++ +++++ e+ Ro07_G19638 322 DRELKRERRKQSNRESARRSRLRKQAETDELARKVEALNADNVSLKSEINRLTESSDRMRVEN 384 689******************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MQKMYGYGLP PLKTFLSSLV LDFGREQVEI WISEFKQPNG VRVEAELDLD DFYLFVDPKN 60 HTSQTNIHVY PDWAAMQAYY GPRVPMPPYY NSPATSGHSP HPYMWGPPQT MMSPYGTPYA 120 AIYSHGSVYA HPAVPLGSNG QGVPLSPAVA NPSSMETPTK SSGNKDRGLK KLKGFDVLEM 180 SIGNGNAENA EGGADQSLNK SFATEVSSSD GNTSGVRTSS FPANQTRRKR SREGTPASAG 240 NEKPEMQASS ASAKEVNVAS DKALRATVAA VSVPGKLVGP AVSPGMTTVL ELKNSPNLNL 300 TSTTSVQQTC AILPPETWLQ NDRELKRERR KQSNRESARR SRLRKQAETD ELARKVEALN 360 ADNVSLKSEI NRLTESSDRM RVENASLMEK LKKARVGRME EIIINIDDSK VQAISTENLL 420 SRVNNSGSIA RDVEEEGGMH EKNAGAKLHQ LLDASPRADA IAAG

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MQKMYGYGLP PLKTFLSSLV LDFGREQVEI WISEFKQPNG VRVEAELDLD DFYLFVDPKN  60
HTSQTNIHVY PDWAAMQAYY GPRVPMPPYY NSPATSGHSP HPYMWGPPQT MMSPYGTPYA  120
AIYSHGSVYA HPAVPLGSNG QGVPLSPAVA NPSSMETPTK SSGNKDRGLK KLKGFDVLEM  180
SIGNGNAENA EGGADQSLNK SFATEVSSSD GNTSGVRTSS FPANQTRRKR SREGTPASAG  240
NEKPEMQASS ASAKEVNVAS DKALRATVAA VSVPGKLVGP AVSPGMTTVL ELKNSPNLNL  300
TSTTSVQQTC AILPPETWLQ NDRELKRERR KQSNRESARR SRLRKQAETD ELARKVEALN  360
ADNVSLKSEI NRLTESSDRM RVENASLMEK LKKARVGRME EIIINIDDSK VQAISTENLL  420
SRVNNSGSIA RDVEEEGGMH EKNAGAKLHQ LLDASPRADA IAAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	345	RRSRLRK
2	339	346	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-110	bZIP family protein