PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G19883

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 609aa MW: 69745.7 Da PI: 8.7041

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G19883	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.5	1.1e-13	71	159	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y Y++ + F ++ ++ +k g+it+r+ vC++egkre + + +++ + + etr++C a + +k +g++ +++++ eHnH+la Ro07_G19883 71 WYTMYGTALAFGTQLQRASKG--FGKITRRRIVCNEEGKREAKWLEkKDRVCNAKRETRCNCLAACCFNFDKdRGTYFISEFKIEHNHDLA 159 799********99986665..999***********9977623455568899*99999998888*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence
MNFEHQSSID GQYIEVESTH KDSIDTQHEE RVNNGNNNFT STNSVRENFA ELIEEDVVGR 60 EFATLEDAEK WYTMYGTALA FGTQLQRASK GFGKITRRRI VCNEEGKREA KWLEKKDRVC 120 NAKRETRCNC LAACCFNFDK DRGTYFISEF KIEHNHDLAM QREVHFIRSN CRVTDADVGH 180 IGAMRTFSIS TSRAYDYLVK SSGGFQFVGY TSKDLIEERE VSESLTAWLE MMYRKRERWA 240 EAFFTSHFFG GMTSTQRCEG MNNHLKFGIG RYWKIYEILP RLARTLKRIR NDVIKDDFNC 300 RNSSPVLITH MRSLEGKLAH KITHDMYLVA RHQIKLEKKY LVVNKISFIG SFICYVTQYK 360 RPERKWTVEV NNNNSDPQFK CSCKLFKSDG VPYAHMFCVM KTEHMETLPD SLIHTRWTKM 420 ARENFVDKAP LQNGSDKSMQ ISRCAALHSI TNNICYNGSL TGEGFRIVQT ELAKLKITAE 480 WFMTEHNATR FETDNSSQNN SSEYHPNVVK DPVIHKSKKA RQAEETTITG ETLRAEKHCT 540 FYKATGHNSR TCPDKATADK AAANTAAANN AAAYMAAAYM AAASGGGIPK ARFQDQAQHT 600 TQTQIHSIS

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence

MNFEHQSSID GQYIEVESTH KDSIDTQHEE RVNNGNNNFT STNSVRENFA ELIEEDVVGR  60
EFATLEDAEK WYTMYGTALA FGTQLQRASK GFGKITRRRI VCNEEGKREA KWLEKKDRVC  120
NAKRETRCNC LAACCFNFDK DRGTYFISEF KIEHNHDLAM QREVHFIRSN CRVTDADVGH  180
IGAMRTFSIS TSRAYDYLVK SSGGFQFVGY TSKDLIEERE VSESLTAWLE MMYRKRERWA  240
EAFFTSHFFG GMTSTQRCEG MNNHLKFGIG RYWKIYEILP RLARTLKRIR NDVIKDDFNC  300
RNSSPVLITH MRSLEGKLAH KITHDMYLVA RHQIKLEKKY LVVNKISFIG SFICYVTQYK  360
RPERKWTVEV NNNNSDPQFK CSCKLFKSDG VPYAHMFCVM KTEHMETLPD SLIHTRWTKM  420
ARENFVDKAP LQNGSDKSMQ ISRCAALHSI TNNICYNGSL TGEGFRIVQT ELAKLKITAE  480
WFMTEHNATR FETDNSSQNN SSEYHPNVVK DPVIHKSKKA RQAEETTITG ETLRAEKHCT  540
FYKATGHNSR TCPDKATADK AAANTAAANN AAAYMAAAYM AAASGGGIPK ARFQDQAQHT  600
TQTQIHSIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-13	FAR1 family protein