PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20249

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 249aa MW: 28008.2 Da PI: 5.1719

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20249	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ +G +W+++++ g++R++k+c++rw +yl Ro07_G20249 14 KGPWTAEEDKKLVNFMLTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49.4	1e-15	72	111	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ Ro07_G20249 72 EAEEQLVIDLHASLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111 67*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MGRQPCCDKL GVKKGPWTAE EDKKLVNFML THGQCCWRAV PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL NEAEEQLVID LHASLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPITHEPLH KQVTTPQETP SLANDQQNVN IPEHGVSSND NGSSATENSS SNEAQSLIEV 180 NANSDDDPLV SYILSDTFLE DWSWNFPAVE DNYSDFGLSS TSSEDNSSAW FMDCKDFGVE 240 DFELGNCIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	1e-89	MYB family protein