PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G20423
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 264aa    MW: 30244.5 Da    PI: 6.8633
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G20423genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.93.2e-3182172187
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f kv tpsdv+k++rlv+pk++ae++    ++ +e++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+++ r
  Ro07_G20423  82 FNKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFQDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFERNVR 172
                  89***************************966778999*************************************************6533 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MEYFVLGNQK GYSNKEEDHE EEEEDKNNII NSKYLSPSYN YGSSSSSQTA EAINFMDLSL  60
RNAKDDNNNN DWPPNSEREH MFNKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL  120
LNFQDRTGKP WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFERN VRDSNVFTNK  180
RLRLFGVNME CSPIQEDQPE QCQILSSTVA SLSPHHHHHH LPSSSLSQPL ELRLPNHAAP  240
LPGSADQLLS KKGKSTSLSF YLDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-60B3 family protein