PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20632

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 191aa MW: 20850.5 Da PI: 9.1608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20632	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Ro07_G20632 43 FECKTCNRQFPSFQALGGHRASH 65 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MKRSMTELDH SVTMANCLMF LSRGNEYDSL ISTSSSSSPS RVFECKTCNR QFPSFQALGG 60 HRASHKKPRL AGGDGSSSDQ SQSSSPSKPK THECNICGLE FAIGQALGGH MRRHRAAVTD 120 SNNHHRNHNG QSNSMMGLSS SNLGQVVVPV LKKTNSSRRV LCLDLNLTPF ENDMEILGIG 180 KTNPPLVEFI F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	1e-36	C2H2 family protein