PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G20802
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 216aa    MW: 23498 Da    PI: 7.7291
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G20802genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.91.9e-39191191100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela++
  Ro07_G20802  19 PCGACKFLRRKCLRGCIFAPYFDSDQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVAHIFTLQQQVVNLQAELAYV 116
                  7***********************9989*********************************************************************9 PP

       DUF260  98 kee 100
                  +++
  Ro07_G20802 117 HAR 119
                  976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MSSGSTNIAD NGGGSQGGPC GACKFLRRKC LRGCIFAPYF DSDQGTAHFA AVHKVFGASN  60
ASKLLLRIPP HKRLDAVVTL CYEALARVRD PVYGCVAHIF TLQQQVVNLQ AELAYVHARL  120
ATLQCLPPPP LPPQTQSLHS SSNIVAPPSD LVPISNLMHL DPLQTQQCAG QEMTSLFNPL  180
DQELIDGEDL QALAREFVCR YLPGVRFRPP GPHQNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-62LBD family protein