PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G20803
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 253aa    MW: 25707 Da    PI: 7.8193
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G20803genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601261.9e-39331331100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ ++++eA+ar++dPvyG+v++i++lqqq+ +l+ae+++l
  Ro07_G20803  33 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVLTVCFEAQARLKDPVYGCVAHIFALQQQVVNLQAEISYL 130
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Ro07_G20803 131 QAH 133
                  986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MNATTTNPSG GGSCGGGGGG SNSGGSGGGS AGPCGACKFL RRKCVAGCIF APYFDSEQGA  60
AHFAAVHKVF GASNVSKLLL HIPAHKRPDA VLTVCFEAQA RLKDPVYGCV AHIFALQQQV  120
VNLQAEISYL QAHLATMELP SPPPPPPPPS SLVTPPPLSI ADLPSASSMP PSYDLSSLFE  180
PMVQPTAWVM QQRALLHNQH HHFGGGSGGS SSGGGGGSGD LQALARELLH RHSASPSGSV  240
PCSEASPSPS LSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-77LBD family protein