PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20817

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 442aa MW: 48214.2 Da PI: 9.6496

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20817	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	81.4	8e-26	120	165	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrCrRtDGKkWRCsr+v++++k+CE+H+hrgr+rsrk++e+s Ro07_G20817 120 DPEPGRCRRTDGKKWRCSRDVVPDEKYCEKHMHRGRHRSRKPVETS 165 79****************************************9975 PP
2	WRC	69.6	3.8e-22	335	374	2	41
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 epgrCrRtDGKkWRC+r vl+++k+C+rH+hrg ++ r Ro07_G20817 335 LEPGRCRRTDGKKWRCKRGVLPDQKYCDRHIHRGVKQMRA 374 59********************************988765 PP
3	QLQ	43.1	1.3e-15	53	87	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQl++L++Q l+yKy+aa++P P +L+++i+k Ro07_G20817 53 FTVAQLEELEQQRLIYKYIAAGLPAPLQLVLPIWK 87 9********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MEEAQIVRVV KQEVVDQEES SPSIKLGLAI GVHGGCDDSE LGKRGSGRRR SEFTVAQLEE 60 LEQQRLIYKY IAAGLPAPLQ LVLPIWKSVA VSFGRSNAAF YQQYPSFLGF GSFDYRSKMD 120 PEPGRCRRTD GKKWRCSRDV VPDEKYCEKH MHRGRHRSRK PVETSEVTSP PSTKLPKNSE 180 DELLNSKKNL QIPTPKGLQL MAQSSNVSVG HGPTTFSSGY HELAKNISTV AYTTRTPSYI 240 TAATPAAAAT ATTAGPMTAT ASAYNGNNLW IGVKDYAVNH AANYGIIRGS RNNINVGSNI 300 SHGSGFSPKS VLQGGHMILV NCNGVYFDNG SGEELEPGRC RRTDGKKWRC KRGVLPDQKY 360 CDRHIHRGVK QMRASLPVAA ASTSAAAMNT TRPSQTTVPN TNLTMSIPAR SPVMQNDEKS 420 NSSSDSDATI TDTSLAAYEQ LI

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MEEAQIVRVV KQEVVDQEES SPSIKLGLAI GVHGGCDDSE LGKRGSGRRR SEFTVAQLEE  60
LEQQRLIYKY IAAGLPAPLQ LVLPIWKSVA VSFGRSNAAF YQQYPSFLGF GSFDYRSKMD  120
PEPGRCRRTD GKKWRCSRDV VPDEKYCEKH MHRGRHRSRK PVETSEVTSP PSTKLPKNSE  180
DELLNSKKNL QIPTPKGLQL MAQSSNVSVG HGPTTFSSGY HELAKNISTV AYTTRTPSYI  240
TAATPAAAAT ATTAGPMTAT ASAYNGNNLW IGVKDYAVNH AANYGIIRGS RNNINVGSNI  300
SHGSGFSPKS VLQGGHMILV NCNGVYFDNG SGEELEPGRC RRTDGKKWRC KRGVLPDQKY  360
CDRHIHRGVK QMRASLPVAA ASTSAAAMNT TRPSQTTVPN TNLTMSIPAR SPVMQNDEKS  420
NSSSDSDATI TDTSLAAYEQ LI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	1e-45	GRF family protein