PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G20822

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 489aa MW: 56711.8 Da PI: 10.2619

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G20822	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31	4.4e-10	275	366	2	82
EEE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 +k+l +sd+ + +rl++p k ++++ ++k e+ t++l d++ ++ ++ l+ k+s++yvl++ W + v++n+L+ gD++ Ro07_G20822 275 EKKLFKSDTIQGeNRLSMPLKQMRSNfleddevkRLEKDETLTVSLIDTKLQERDICLRRwnMKTSKWYVLKTQWIKIVRDNKLRIGDVIQV 366 68888898888779**************9999666778889*99966666664424445888******************9854 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MKEKPLFRGE VFGPNLSSLD ILFKVTAVAA KKLEQEKKLK KQRMMGAFNS KKEETEAYQV 60 DQSVSKEETW VAEKSTSKKP LLAILKKEKP MVIEPKKALE SCNGACLSAP FVPKKRRGWQ 120 PKKERGISEE RVMISKKNGL KRKFRDEDWG LELNNSEMRK SMIKRQNKKL VPNSTTTTTT 180 TTTTHDWPEE FKKKIEKVDL VNEKKLFKPD DVDNDVYDDD WDFAMKNKFE KRKGLMKKQK 240 KNLVRNTTTT THDLPEKLKK KIETLGGIKV ELVIEKKLFK SDTIQGENRL SMPLKQMRSN 300 FLEDDEVKRL EKDETLTVSL IDTKLQERDI CLRRWNMKTS KWYVLKTQWI KIVRDNKLRI 360 GDVIQVWSFR DENNNLHLAL VLVEIDLIEI KGEDSNGSGC SKNGFFHGER SSGNRGFPRN 420 CKHREAAIYV KGEHSSIAEE AKKSHCYYLH LPQSPSLDRS EALPAIAQVK LAISECMIKY 480 PITKQMKKM

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MKEKPLFRGE VFGPNLSSLD ILFKVTAVAA KKLEQEKKLK KQRMMGAFNS KKEETEAYQV  60
DQSVSKEETW VAEKSTSKKP LLAILKKEKP MVIEPKKALE SCNGACLSAP FVPKKRRGWQ  120
PKKERGISEE RVMISKKNGL KRKFRDEDWG LELNNSEMRK SMIKRQNKKL VPNSTTTTTT  180
TTTTHDWPEE FKKKIEKVDL VNEKKLFKPD DVDNDVYDDD WDFAMKNKFE KRKGLMKKQK  240
KNLVRNTTTT THDLPEKLKK KIETLGGIKV ELVIEKKLFK SDTIQGENRL SMPLKQMRSN  300
FLEDDEVKRL EKDETLTVSL IDTKLQERDI CLRRWNMKTS KWYVLKTQWI KIVRDNKLRI  360
GDVIQVWSFR DENNNLHLAL VLVEIDLIEI KGEDSNGSGC SKNGFFHGER SSGNRGFPRN  420
CKHREAAIYV KGEHSSIAEE AKKSHCYYLH LPQSPSLDRS EALPAIAQVK LAISECMIKY  480
PITKQMKKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	141	KKRRGWQPKKERGISEERVMISKKNGLK
2	114	143	KKRRGWQPKKERGISEERVMISKKNGLKRK
3	237	280	KKQKKNLVRNTTTTTHDLPEKLKKKIETLGGIKVELVIEKKLFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05930.1	2e-10	B3 family protein