PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G21109
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 721aa    MW: 83050.2 Da    PI: 7.4796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G21109genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-1418109199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv ++++  +++ l+lp kf++++g+  e s    l  ++gr+W v l  ++ ++r+++ + W+ F++   L+ gDf+ F+++g+s+f  ++ +f+
  Ro07_G21109  18 FFKVILQPSKQRQK-LRLPPKFVKKFGK--ELSNVALLSVPTGRVWHVGL--ERVDKRIWFVQDWQAFAEYYSLCYGDFLEFRYEGKSKF--RILIFD 108
                  88999999888887.********99984..4776666667**********..*********************************99999..888887 PP

                  S CS
           B3  99 k 99 
                  +
  Ro07_G21109 109 T 109
                  6 PP
2B3474.5e-15265353193
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  ff++ +++d++    l +p +fae++  g++  +   ++l+d++ + W+v++  + +++  ++ kG ++F  +n+L++gD+++F++++++++  v
  Ro07_G21109 265 FFSIILQPDNFMMYYLHVPTEFAEKYlsGYS--G--SIKLQDSNAKHWDVRFV-CVNPSLQIMCKGCSQFFADNNLEVGDVCLFEMMKKKGG-VV 353
                  7889999*******************75433..4..5***************5.55555566778********************9986444.33 PP
3B3491.1e-154405261299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++  l++p +fa+++ +   +s  ++l+d +g +W+v+++ ++ s++   +++G +eF   ++L++gD+++F+l++r++  l+v+v+++
  Ro07_G21109 440 NNYHLSVPVDFARKYLSR--CSEFIKLQDYNGDQWDVQCTSTNASSSvLRFGRGYNEFLAYKNLEQGDVCLFELIKRKDVVLKVSVLSA 526
                  55569**********755..8889***************996666665999**************************999999999876 PP
4B352.87.3e-17626716699
                  ..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   6 tpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++++++k++ + +p +f ++h g +  +s  +tle ++ ++W+v+liy  +++r  +++GW  F  +n+L+egD++vF+l+ +++  l+ ++fr+
  Ro07_G21109 626 LRHYHMKESFVAVPAEFDSKHlGDD--CSAFITLEASNEKQWRVRLIYGSNRKR--ISEGWGAFSMENNLEEGDVCVFELIASMDVVLKASIFRA 716
                  4778889999***********6555..999****************88666666..99***********************99999899999885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    
MSKTHRRSDS PASVPFHFFK VILQPSKQRQ KLRLPPKFVK KFGKELSNVA LLSVPTGRVW  60
HVGLERVDKR IWFVQDWQAF AEYYSLCYGD FLEFRYEGKS KFRILIFDTT CSEIAYPSTG  120
QSSNQQQNSD MDSLGIHEED MGDDHVTDIL DTTTPLSHAS IKSKRKCVDE QVLERRHVLH  180
SGMNLECQRG ANTKECMECQ SADETGRKKS RYEDEGDIID SSSMTKSVQA SLKKNYDKEV  240
FARNISIENM KVIQATNMNR PKNPFFSIIL QPDNFMMYYL HVPTEFAEKY LSGYSGSIKL  300
QDSNAKHWDV RFVCVNPSLQ IMCKGCSQFF ADNNLEVGDV CLFEMMKKKG GVVLKVSVLC  360
AAEYSDIIDS RNVKKSTQTR GSQDLSTRQS KDEEMFAFDL FSYTYPEWQL KFPNELEKVT  420
YATRMFKLKN PFFAVILQFN NYHLSVPVDF ARKYLSRCSE FIKLQDYNGD QWDVQCTSTN  480
ASSSVLRFGR GYNEFLAYKN LEQGDVCLFE LIKRKDVVLK VSVLSASQYE VLHDKGKNVD  540
ESRNRRYAYE DEEDVIAELV GRLNENGKSP SHKLSADHQE NTENCNSGTL YYSFKIEKMK  600
MSKESRRAFN AAKKFKTENP AFLVILRHYH MKESFVAVPA EFDSKHLGDD CSAFITLEAS  660
NEKQWRVRLI YGSNRKRISE GWGAFSMENN LEEGDVCVFE LIASMDVVLK ASIFRAAEYA  720
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-45B3 family protein