PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G21421
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 232aa    MW: 25548.2 Da    PI: 5.1794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G21421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18124175155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t+++A  a+++a+ kl+g
  Ro07_G21421 124 SHYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTYETPQDAGLAYDRAAFKLRG 175
                  79********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MYGQTTVESA DSDSALLESI RQHLLGDLME PPATIFGGDV DDIVSLFFPS TTTASSCLRS  60
PWFHCFTTEN WWESALKPED SESEAVSSPC VTEDEDDIKL REQTQTQTAS VAVACEVQAP  120
RVESHYRGVR RRPWGKYAAE IRDPAKNGAR VWLGTYETPQ DAGLAYDRAA FKLRGCKAKL  180
NFPHLIGSNS VEPVRVTPKR RRSPEQSSTL SSSASASASA SDNNESSEAK RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-45ERF family protein