PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G21927

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28336.1 Da PI: 9.4849

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G21927	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.7	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLC+aeva+iifss+gklye+ss Ro07_G21927 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCEAEVALIIFSSRGKLYEFSS 59 79***********************************************96 PP
2	K-box	97.8	1.6e-32	80	170	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++es+++e++kL++++e+L r+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+e+l+kke++l + n +Lr kl+ Ro07_G21927 80 AIKQETESWYEEVSKLRAKYESLLRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTQIMTEQMEQLRKKERQLGDLNVQLRVKLQ 170 557899*********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCE AEVALIIFSS RGKLYEFSSA 60 GMTNTLERYQ RSSFSPHDNA IKQETESWYE EVSKLRAKYE SLLRTQRHLL GEDLGPLSVK 120 ELQNLEKQLE GALAQARQRK TQIMTEQMEQ LRKKERQLGD LNVQLRVKLQ KEGENLKAIQ 180 DFWSSNNAAA GNSNFLHSSQ ASHMDPPPEP ILQIGYHHYV AAEESQDVPK SMAMAAETNF 240 IQGWAER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-101	MIKC_MADS family protein