PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G21930

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24775.1 Da PI: 8.0845

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G21930	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.4	5.2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye++s Ro07_G21930 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 79***********************************************86 PP
2	K-box	80.8	3.2e-27	80	172	6	97
K-box 6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + +e+++++l+qe++ + k+ie L+ ++R+llGe+++ ++++eLq+LeqqLe+s+ +iR++K+++++eqie+l++ke+ l en++L +k Ro07_G21930 80 K-KsvSTEQNEQQLKQEASGMMKQIEHLEVSKRKLLGESVGLCTIEELQELEQQLETSVHRIRARKTQVFKEQIEQLREKERVLAAENERLFEK 172 2.23589999********************************************************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 SMQGTIERYE KHTKDNQANK KSVSTEQNEQ QLKQEASGMM KQIEHLEVSK RKLLGESVGL 120 CTIEELQELE QQLETSVHRI RARKTQVFKE QIEQLREKER VLAAENERLF EKCGAMQQRE 180 PETEQRENLA SNESSQSSDV ETELLHLAYI HMTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	LREKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	4e-82	MIKC_MADS family protein